Topic: claude-code
35,830 skills in this topic.
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citation-management
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
x-cmd/skill 19
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biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
x-cmd/skill 19
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benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
x-cmd/skill 19
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astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
x-cmd/skill 19
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arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
x-cmd/skill 19
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alphafold-database
Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
x-cmd/skill 19
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aeon
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
x-cmd/skill 19
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srgn-cli
Practical guide for building safe, syntax-aware srgn CLI commands for source-code search and transformation. Use when users ask for srgn commands, scoped refactors (comments/docstrings/imports/functions), multi-file rewrites with --glob, custom tree-sitter query usage, or CI-style checks with --fail-any/--fail-none.
OutlineDriven/odin-claude-plugin 17
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reviews
Review the code changes on the current branch. Use when the user asks to review their current work, analyze recent commits, or get a code quality assessment of the active branch against the main branch.
OutlineDriven/odin-claude-plugin 17
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resolve
Resolve code review comments by verifying their validity and proposing multiple solutions for confirmed issues. Use when addressing review feedback, analyzing whether review comments are valid, and generating architectural solutions (not naive fixes) for confirmed issues.
OutlineDriven/odin-claude-plugin 17
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refactor-break-bw-compat
Refactor by removing backward compatibility and legacy layers. Use when modernizing APIs, cleaning up migration debt, removing compat shims, or eliminating stale feature flags.
OutlineDriven/odin-claude-plugin 17
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proof-driven
Proof-driven development - design proofs from requirements, then execute CREATE -> VERIFY -> REMEDIATE cycle. Use when implementing with formal verification using property-based testing, theorem proving, or proof tactics; zero unproven property policy enforced.
OutlineDriven/odin-claude-plugin 17
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proceed
Execute an implementation plan with surgical precision. Use after a planning phase (plan-now or similar) has produced a step-by-step strategy and identified critical files. Focuses on precise code changes with verification at each step.
OutlineDriven/odin-claude-plugin 17
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pr-reviews
Review code changes on a given GitHub PR using gh CLI. Use when the user asks to review a pull request, analyze PR diffs, or provide feedback on open PRs with structured quality, security, and testing assessments.
OutlineDriven/odin-claude-plugin 17
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pr-merge-temporal
Merge multiple PRs into a temporal integration branch before merging to base, with ordered conflict resolution. Use when you want to validate a set of PRs together on a staging branch before advancing the base branch.
OutlineDriven/odin-claude-plugin 17
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pr-merge-base
Merge one or more PRs into the base branch with queue-like sequencing and conflict resolution. Use when merging PRs that may conflict with each other or the base, requiring ordered application and intelligent conflict handling.
OutlineDriven/odin-claude-plugin 17
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plans
Software architect and planning specialist - conduct thorough read-only planning before any action. Use when exploring a codebase to design implementation plans, defining objectives, gathering relevant files, and summarizing available tools before coding begins.
OutlineDriven/odin-claude-plugin 17
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parallel-launch
Decompose a task into independent concerns and execute them through broadly parallel, specialized agent groups. Use when a request involves multiple independent sub-tasks, research across separate domains, or work that can be parallelized across files or modules.
OutlineDriven/odin-claude-plugin 17
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inits
Analyze a codebase and create or improve an AGENTS.md file for future agent instances. Use when onboarding to a repository and capturing hard-to-rediscover conventions, constraints, and rationale.
OutlineDriven/odin-claude-plugin 17
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gh-fix-ci
Inspect GitHub PR checks with gh, pull failing GitHub Actions logs, summarize failure context, then create a fix plan and implement after user approval. Use when a user asks to debug or fix failing PR CI/CD checks on GitHub Actions and wants a plan + code changes; for external checks (e.g., Buildkite), only report the details URL and mark them out of scope.
OutlineDriven/odin-claude-plugin 17
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gh-address-comments
Help address review/issue comments on the open GitHub PR for the current branch using gh CLI; verify gh auth first and prompt the user to authenticate if not logged in.
OutlineDriven/odin-claude-plugin 17
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design-by-contract
Design-by-Contract (DbC) development - design contracts from requirements, then execute CREATE -> VERIFY -> TEST cycle. Use when implementing with formal preconditions, postconditions, and invariants across any language.
OutlineDriven/odin-claude-plugin 17
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contexts
Coordinate context sweep before coding - gather relevant files, patterns, and tooling summaries. Use when preparing to implement a feature, fix, or refactor and need comprehensive architecture, pattern, tooling, and dependency context gathered first.
OutlineDriven/odin-claude-plugin 17
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ast-grep
Effective code search, analysis, and refactoring using ast-grep (sg). Use this skill for precise AST-based code modifications, structural search, and linting.
OutlineDriven/odin-claude-plugin 17