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Agent skills
bioinformatics

Topic: bioinformatics

180 skills in this topic.

post-processing Extract, analyze, and visualize simulation output data. Use for field extraction, time series analysis, line profiles, statistical summaries, derived quantity computation, result comparison to references, and automated report generation from simulation results.
beita6969/ScienceClaw 571
diffs Use the diffs tool to produce real, shareable diffs (viewer URL, file artifact, or both) instead of manual edit summaries.
beita6969/ScienceClaw 571
feishu-doc Feishu document read/write operations. Activate when user mentions Feishu docs, cloud docs, or docx links.
beita6969/ScienceClaw 571
bear-notes Create, search, and manage Bear notes via grizzly CLI.
beita6969/ScienceClaw 571
data-stats-analysis Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
beita6969/ScienceClaw 571
arxiv-search Search arXiv for preprints in physics, math, CS, quantitative biology, quantitative finance, statistics, electrical engineering, economics. Use when: (1) finding preprints by topic, (2) searching by author, (3) browsing arXiv categories, (4) getting paper metadata/abstracts. NOT for: published journal articles (use crossref-search), biomedical (use pubmed-search).
beita6969/ScienceClaw 571
research-lookup Look up current research information using the Parallel Chat API (primary) or Perplexity sonar-pro-search (academic paper searches). Automatically routes queries to the best backend. Use for finding papers, gathering research data, and verifying scientific information.
beita6969/ScienceClaw 571
test-driven-development Use when implementing any feature or bugfix, before writing implementation code
beita6969/ScienceClaw 571
xurl A CLI tool for making authenticated requests to the X (Twitter) API. Use this skill when you need to post tweets, reply, quote, search, read posts, manage followers, send DMs, upload media, or interact with any X API v2 endpoint.
beita6969/ScienceClaw 571
latex-writing Write and format LaTeX documents for academic journals. Use when: user asks to write LaTeX code, format papers for specific journals (Nature/Science/IEEE/ACM), create equations, tables, or BibTeX entries. NOT for: non-LaTeX writing (use paper-writing), data analysis, or literature search.
beita6969/ScienceClaw 571
networkx Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
beita6969/ScienceClaw 571
math-computation Mathematical computation including symbolic math, numerical methods, linear algebra, calculus, differential equations, optimization, and mathematical modeling. Uses Python with SymPy, NumPy, SciPy. Use when user asks to solve equations, compute integrals/derivatives, do matrix operations, solve ODEs/PDEs, optimize functions, or build mathematical models. Triggers on "solve equation", "integral", "derivative", "matrix", "eigenvalue", "differential equation", "optimization", "linear algebra", "symbolic math", "proof".
beita6969/ScienceClaw 571
biorxiv-search Search bioRxiv biology preprints with natural language queries. Semantic search powered by Valyu.
beita6969/ScienceClaw 571
pubmed-database Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
beita6969/ScienceClaw 571
lobster
beita6969/ScienceClaw 571
quantum-computing Designs and analyzes quantum computing solutions including quantum circuit construction, algorithm implementation, error correction, and quantum advantage assessment; trigger when users discuss qubits, quantum gates, quantum algorithms, or quantum hardware.
beita6969/ScienceClaw 571
computational-pathology-agent COPYRIGHT NOTICE
beita6969/ScienceClaw 571
lit-synthesizer Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.
beita6969/ScienceClaw 571
prose OpenProse VM skill pack. Activate on any `prose` command, .prose files, or OpenProse mentions; orchestrates multi-agent workflows.
beita6969/ScienceClaw 571
acp-router Route plain-language requests for Pi, Claude Code, Codex, OpenCode, Gemini CLI, or ACP harness work into either OpenClaw ACP runtime sessions or direct acpx-driven sessions ("telephone game" flow). For coding-agent thread requests, read this skill first, then use only `sessions_spawn` for thread creation.
beita6969/ScienceClaw 571
statsmodels Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. For guided statistical test selection with APA reporting use statistical-analysis.
beita6969/ScienceClaw 571
wikidata-knowledge Query Wikidata for structured knowledge using SPARQL and entity search. Use when: (1) finding structured facts about entities (people, places, organizations), (2) querying relationships between entities, (3) cross-referencing external identifiers (Wikipedia, VIAF, GND, ORCID), (4) building knowledge graphs from linked data. NOT for: full-text article content (use Wikipedia API), scientific literature (use semantic-scholar), geospatial data (use OpenStreetMap).
beita6969/ScienceClaw 571
epidemiology Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference from observational data; trigger when users discuss disease spread, public health data, or population-level health patterns.
beita6969/ScienceClaw 571
energy-systems Analyzes energy systems including renewable energy resource assessment, power grid modeling, battery storage optimization, energy efficiency evaluation, and techno-economic analysis of energy technologies; trigger when users discuss solar, wind, grid integration, energy storage, or power system design.
beita6969/ScienceClaw 571