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Agent skills
bioinformatics

Topic: bioinformatics

180 skills in this topic.

acp-router Route plain-language requests for Pi, Claude Code, Codex, OpenCode, Gemini CLI, or ACP harness work into either OpenClaw ACP runtime sessions or direct acpx-driven sessions ("telephone game" flow). For coding-agent thread requests, read this skill first, then use only `sessions_spawn` for thread creation.
beita6969/ScienceClaw 571
post-processing Extract, analyze, and visualize simulation output data. Use for field extraction, time series analysis, line profiles, statistical summaries, derived quantity computation, result comparison to references, and automated report generation from simulation results.
beita6969/ScienceClaw 571
epidemiology Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference from observational data; trigger when users discuss disease spread, public health data, or population-level health patterns.
beita6969/ScienceClaw 571
diffs Use the diffs tool to produce real, shareable diffs (viewer URL, file artifact, or both) instead of manual edit summaries.
beita6969/ScienceClaw 571
brainstorming You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
beita6969/ScienceClaw 571
arxiv-search Search arXiv for preprints in physics, math, CS, quantitative biology, quantitative finance, statistics, electrical engineering, economics. Use when: (1) finding preprints by topic, (2) searching by author, (3) browsing arXiv categories, (4) getting paper metadata/abstracts. NOT for: published journal articles (use crossref-search), biomedical (use pubmed-search).
beita6969/ScienceClaw 571
feishu-drive Feishu cloud storage file management. Activate when user mentions cloud space, folders, drive.
beita6969/ScienceClaw 571
statsmodels Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. For guided statistical test selection with APA reporting use statistical-analysis.
beita6969/ScienceClaw 571
openalex-search Open academic metadata via OpenAlex API. Use when: user needs author profiles, institution data, concept mapping, or open citation data. NOT for: full-text search or downloading papers.
beita6969/ScienceClaw 571
energy-systems Analyzes energy systems including renewable energy resource assessment, power grid modeling, battery storage optimization, energy efficiency evaluation, and techno-economic analysis of energy technologies; trigger when users discuss solar, wind, grid integration, energy storage, or power system design.
beita6969/ScienceClaw 571
wikidata-knowledge Query Wikidata for structured knowledge using SPARQL and entity search. Use when: (1) finding structured facts about entities (people, places, organizations), (2) querying relationships between entities, (3) cross-referencing external identifiers (Wikipedia, VIAF, GND, ORCID), (4) building knowledge graphs from linked data. NOT for: full-text article content (use Wikipedia API), scientific literature (use semantic-scholar), geospatial data (use OpenStreetMap).
beita6969/ScienceClaw 571
prose OpenProse VM skill pack. Activate on any `prose` command, .prose files, or OpenProse mentions; orchestrates multi-agent workflows.
beita6969/ScienceClaw 571
himalaya CLI to manage emails via IMAP/SMTP. Use `himalaya` to list, read, write, reply, forward, search, and organize emails from the terminal. Supports multiple accounts and message composition with MML (MIME Meta Language).
beita6969/ScienceClaw 571
statistical-testing Advanced statistical testing including hypothesis testing, Bayesian analysis, survival analysis, time series, multivariate methods, and meta-analysis. Use when user needs specific statistical tests beyond basic EDA, power analysis, Bayesian inference, survival curves, time series forecasting, or meta-analysis. Triggers on "hypothesis test", "Bayesian", "survival analysis", "time series", "meta-analysis", "bootstrap", "permutation test", "mixed model", "structural equation".
beita6969/ScienceClaw 571
openai-whisper Local speech-to-text with the Whisper CLI (no API key).
beita6969/ScienceClaw 571
data-stats-analysis Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
beita6969/ScienceClaw 571
lobster
beita6969/ScienceClaw 571
fluidsim Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
beita6969/ScienceClaw 571
biomcp Search and retrieve biomedical data - genes, variants, clinical trials, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, drug safety, pathway context, disease workups, and literature evidence.
genomoncology/biomcp 488
polars-bio High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.
K-Dense-AI/claude-scientific-skills 16,890
biopython Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
K-Dense-AI/claude-scientific-skills 16,890
consciousness-council Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge. Use this skill whenever the user wants diverse viewpoints, needs help making a tough decision, asks for a council/panel/board discussion, wants to explore a problem from multiple angles, requests devil's advocate analysis, or says things like "what would different experts think about this", "help me think through this from all sides", "council mode", "mind council", or "deliberate on this". Also trigger when the user faces a dilemma, trade-off, or complex choice with no obvious answer.
K-Dense-AI/claude-scientific-skills 16,890
stable-baselines3 Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick prototyping, and well-documented algorithm implementations. Best for single-agent RL with Gymnasium environments. For high-performance parallel training, multi-agent systems, or custom vectorized environments, use pufferlib instead.
K-Dense-AI/claude-scientific-skills 16,890
scanpy Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.
K-Dense-AI/claude-scientific-skills 16,890