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Topic: awesome

1,258 skills in this topic.

bio-primer-design-qpcr-primers
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-somatic-variant-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflow-management-wdl-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-metabolomics-statistical-analysis Statistical analysis for metabolomics data. Covers univariate testing, multivariate methods (PCA, PLS-DA), and biomarker discovery. Use when identifying differentially abundant metabolites or building classification models.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-basecalling Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Guppy is deprecated; use Dorado for all new analyses.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-metabolomics-xcms-preprocessing XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. Use when processing raw LC-MS data into a feature table for untargeted metabolomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-clinical-databases-somatic-signatures Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. Use when identifying DNA damage mechanisms or etiology in cancer genomes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-small-rna-seq-target-prediction
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-pathway-go-enrichment Gene Ontology over-representation analysis using clusterProfiler enrichGO. Use when identifying biological functions enriched in a gene list from differential expression or other analyses. Supports all three ontologies (BP, MF, CC), multiple ID types, and customizable statistical thresholds.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
fhir-development
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-imaging-mass-cytometry-data-preprocessing Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when starting IMC analysis from raw MCD files or preparing images for segmentation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-machine-learning-prediction-explanation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-multi-omics-data-harmonization Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value handling across data types. Use when preparing multi-omics datasets for integration analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-pathway-reactome Reactome pathway enrichment using ReactomePA package. Use when analyzing gene lists against Reactome's curated peer-reviewed pathway database. Performs over-representation analysis and GSEA with visualization and pathway hierarchy exploration.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
wearable-analysis-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
using-git-worktrees Use when starting feature work that needs isolation from current workspace or before executing implementation plans - creates isolated git worktrees with smart directory selection and safety verification
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
autonomous-oncology-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-microbiome-amplicon-processing Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. Covers quality filtering, error learning, denoising, and chimera removal. Use when processing demultiplexed amplicon FASTQ files to generate an ASV table for downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-microbiome-functional-prediction Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. Infer KEGG, MetaCyc, and EC abundances from ASV tables. Use when functional profiling is needed from 16S data without shotgun metagenomics sequencing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
pdb Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
gwas-database Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
kragen-knowledge-graph
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-primer-design-primer-validation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009