ReddRadar
Topic: awesome
1,258 skills in this topic.
-
bio-alignment-files-bam-statistics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
spatial-transcriptomics-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
clinical-note-summarization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-consensus-sequences
Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructing haplotypes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
foldseek
Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote homologs not detected by sequence, (5) Clustering structures by similarity.
For sequence similarity, use uniprot BLAST. For structure prediction, use chai or boltz.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
alphafold
Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5) Multi-chain complex prediction with AlphaFold-Multimer.
For faster single-chain prediction, use esm. For QC thresholds, use protein-qc.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
simulation-orchestrator
Orchestrate multi-simulation campaigns including parameter sweeps, batch jobs, and result aggregation. Use for running parameter studies, managing simulation batches, tracking job status, combining results from multiple runs, or automating simulation workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
cnv-caller-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-systems-biology-model-curation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
chromosomal-instability-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
linear-solvers
Select and configure linear solvers for systems Ax=b in dense and sparse problems. Use when choosing direct vs iterative methods, diagnosing convergence issues, estimating conditioning, selecting preconditioners, or debugging stagnation in GMRES/CG/BiCGSTAB.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-spatial-transcriptomics-spatial-neighbors
Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. Compute k-nearest neighbors, Delaunay triangulation, and radius-based connectivity for downstream spatial analyses. Use when building spatial neighborhood graphs.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-clinical-databases-polygenic-risk
Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide genetic variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
mage-antibody-generator
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
simulation-validator
Validate simulations before, during, and after execution. Use for pre-flight checks, runtime monitoring, post-run validation, diagnosing failed simulations, checking convergence, detecting NaN/Inf, or verifying mass/energy conservation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
fda-database
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-single-cell-multimodal-integration
Analyze multi-modal single-cell data (CITE-seq, Multiome, spatial). Use when working with data that measures multiple modalities per cell like RNA + protein or RNA + ATAC. Use when analyzing CITE-seq, Multiome, or other multi-modal single-cell data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
ginkgo-cloud-lab
Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or optimization), generate fluorescent pixel art, or interact with Ginkgo Cloud Lab services. Covers protocol selection, input preparation, pricing, and ordering workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
openalex-database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
string-protein-interaction-analysis-with-omicverse
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
gtex-database
Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs. Essential for linking GWAS variants to gene regulation, understanding tissue-specific expression, and interpreting non-coding variant effects.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-crispr-screens-hit-calling
Statistical methods for calling hits in CRISPR screens. Covers MAGeCK, BAGEL2, drugZ, and custom approaches for identifying essential and resistance genes. Use when identifying significant genes from screen count data after QC passes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
spatial-preprocessing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009