Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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markitdown
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
davila7/claude-code-templates 23,776
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statistical-analysis
Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research.
davila7/claude-code-templates 23,776
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neuropixels-analysis
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
davila7/claude-code-templates 23,776
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scikit-learn
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
davila7/claude-code-templates 23,776
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medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
davila7/claude-code-templates 23,776
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hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
davila7/claude-code-templates 23,776
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qiskit
Comprehensive quantum computing toolkit for building, optimizing, and executing quantum circuits. Use when working with quantum algorithms, simulations, or quantum hardware including (1) Building quantum circuits with gates and measurements, (2) Running quantum algorithms (VQE, QAOA, Grover), (3) Transpiling/optimizing circuits for hardware, (4) Executing on IBM Quantum or other providers, (5) Quantum chemistry and materials science, (6) Quantum machine learning, (7) Visualizing circuits and results, or (8) Any quantum computing development task.
davila7/claude-code-templates 23,776
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clinicaltrials-database
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
davila7/claude-code-templates 23,776
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market-research-reports
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter's Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
davila7/claude-code-templates 23,776
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cosmic-database
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
davila7/claude-code-templates 23,776
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torchdrug
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosynthesis, GNNs (GIN, GAT, SchNet), 40+ datasets, for PyTorch-based ML on molecules, proteins, and biomedical graphs.
davila7/claude-code-templates 23,776
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
davila7/claude-code-templates 23,776
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kegg-database
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
davila7/claude-code-templates 23,776
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scanpy
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
davila7/claude-code-templates 23,776
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latex-posters
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
davila7/claude-code-templates 23,776
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deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
davila7/claude-code-templates 23,776
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pymc-bayesian-modeling
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
davila7/claude-code-templates 23,776
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deep-learning
Neural networks, CNNs, RNNs, Transformers with TensorFlow and PyTorch. Use for image classification, NLP, sequence modeling, or complex pattern recognition.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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model-optimization
Quantization, pruning, AutoML, hyperparameter tuning, and performance optimization. Use for improving model performance, reducing size, or automated ML.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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mlops-deployment
Docker, Kubernetes, CI/CD, model monitoring, and cloud platforms. Use for deploying ML models to production, setting up pipelines, or infrastructure.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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time-series
ARIMA, SARIMA, Prophet, trend analysis, seasonality detection, anomaly detection, and forecasting methods. Use for time-based predictions, demand forecasting, or temporal pattern analysis.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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computer-vision
Image processing, object detection, segmentation, and vision models. Use for image classification, object detection, or visual analysis tasks.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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python-programming
Python fundamentals, data structures, OOP, and data science libraries (Pandas, NumPy). Use when writing Python code, data manipulation, or algorithm implementation.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4
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data-engineering
ETL pipelines, Apache Spark, data warehousing, and big data processing. Use for building data pipelines, processing large datasets, or data infrastructure.
pluginagentmarketplace/custom-plugin-ai-data-scientist 4