ReddRadar
Topic: scientific-research
83 skills in this topic.
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draw
Generate diagrams and vector graphics. Supports Mermaid (flowcharts, sequence diagrams, ER diagrams, Gantt charts, mind maps) via mermaid-py, and custom vector graphics (shapes, text, gradients, layers) via cli-anything-inkscape. Outputs PNG/SVG/PDF to workspace/. Use when the user wants to visualize workflows, architecture, data relationships, research timelines, concept maps, or create polished figures for papers.
ZimoLiao/scholaraio 332
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document
Generate and inspect Office documents (DOCX, PPTX, XLSX). Generate by writing Python scripts that call python-docx, python-pptx, and openpyxl APIs directly. Inspect with `scholaraio document inspect` to verify layout, content, and catch issues (overflow, missing elements). Use when the user wants to create Word reports, PowerPoint presentations, Excel data sheets, or inspect any Office document.
ZimoLiao/scholaraio 332
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citations
View top-cited papers ranking and refetch citation counts from APIs. Use when the user asks about highly cited papers, citation rankings, or wants to update citation data.
ZimoLiao/scholaraio 332
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citation-check
Verify citations in AI-generated or human-written text against the local knowledge base. Catches hallucinated references, wrong metadata, and missing papers. Use when the user wants to check if citations are real and accurate.
ZimoLiao/scholaraio 332
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bioinformatics
Use when working on bioinformatics toolchains such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially when the agent must route across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.
ZimoLiao/scholaraio 332
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audit
Audit paper data quality in the knowledge base. Checks for missing fields, filename issues, DOI duplicates, title mismatches, and more. Supports LLM-based deep diagnosis for title mismatches and automated repair. Use when the user wants to check data quality, find problems, or fix metadata issues.
ZimoLiao/scholaraio 332
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arxiv
Use when the user wants to browse arXiv preprints, search arXiv directly, fetch a PDF by arXiv ID or URL, or send a preprint straight into the ingest pipeline.
ZimoLiao/scholaraio 332
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rename
Rename paper directories to standardized Author-Year-Title format based on JSON metadata. Use when the user wants to normalize filenames after metadata corrections.
ZimoLiao/scholaraio 332
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setup
Initialize and diagnose the ScholarAIO environment. Run interactive setup wizard (bilingual EN/ZH) to install dependencies, create config files, and configure API keys. Run status check to see what's installed and what's missing. Use when the user wants to set up, install, configure, or troubleshoot ScholarAIO.
ZimoLiao/scholaraio 332
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show
View paper content at different detail levels. L1 (metadata), L2 (abstract), L3 (conclusion), L4 (full text). Use when the user wants to read a paper, see its abstract, conclusion, or full content.
ZimoLiao/scholaraio 332
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topics
Explore topic distribution in the paper library using BERTopic clustering. Build/rebuild topic models, view topic overview, list papers in a topic, merge similar topics, and generate HTML visualizations. Use when the user asks about research themes, topic distribution, or wants to discover cross-domain connections.
ZimoLiao/scholaraio 332
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translate
Translate paper markdown to a target language (default Chinese). Preserves LaTeX formulas, code blocks, and images. Supports single paper or batch translation. Use when the user wants to read papers in their native language or translate non-Chinese documents.
ZimoLiao/scholaraio 332
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scientific-tool-onboarding
Use when adding or upgrading ScholarAIO support for a new scientific computing tool, especially when the work needs official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification
ZimoLiao/scholaraio 332
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writing-polish
Polish academic writing — remove AI-generated patterns, improve clarity, and match a target style. Supports both English and Chinese. Use when the user wants to refine prose, remove AI artifacts, or adapt writing to a specific journal style.
ZimoLiao/scholaraio 332
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scientific-runtime
Use when serving scientific CLI tasks through ScholarAIO, especially when the agent should prefer scholaraio toolref, handle partial coverage safely, and avoid turning user work into documentation maintenance.
ZimoLiao/scholaraio 332
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research-gap
Identify research gaps and open questions from the literature in a workspace. Combines topic clustering, citation analysis, and cross-paper comparison. Use when the user wants to find unexplored areas, formulate research questions, or assess where the field is heading.
ZimoLiao/scholaraio 332
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import
Import papers from external reference managers (Endnote XML/RIS, Zotero Web API or local SQLite), or attach a PDF to an existing paper. Handles PDF matching, MinerU conversion, metadata enrichment, and index updates. Use when the user wants to import their existing library from Zotero, Endnote, attach/add a PDF to a paper, or supplement a paper with its PDF.
ZimoLiao/scholaraio 332
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quantum-espresso
Use when working on first-principles materials calculations with Quantum ESPRESSO, especially SCF, band structures, DOS, phonons, electron-phonon coupling, Fermi surfaces, or charge-density analysis.
ZimoLiao/scholaraio 332
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paper-writing
Assist with writing sections of a research paper (Introduction, Related Work, Method, Results, Discussion, Conclusion). Leverages workspace papers for citations and evidence. Use when the user wants help drafting or revising specific paper sections.
ZimoLiao/scholaraio 332
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openfoam
Use when working on CFD cases with OpenFOAM, especially solver selection, dictionary setup, mesh workflow decisions, turbulence-model choices, and verification of fluid-flow or heat-transfer simulations.
ZimoLiao/scholaraio 332
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metrics
View LLM token usage, API call timing, and runtime metrics. Use when the user asks about token consumption, API costs, or performance statistics.
ZimoLiao/scholaraio 332
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literature-review
Write a literature review based on papers in a workspace. Covers topic organization, narrative structure, gap identification, and BibTeX export. Use when the user wants to draft a literature review, survey a research area, or summarize the state of the art.
ZimoLiao/scholaraio 332
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insights
Analyze research behavior data — search hot keywords, most-read papers, reading trends, and semantic neighbors you haven't read yet. Use when the user wants to understand their reading habits, discover overlooked papers, or review recent research activity.
ZimoLiao/scholaraio 332
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ingest
Use when the user wants to process new papers, patents, theses, documents, or proceedings from inbox into the knowledge base, run the ingest pipeline, or rebuild indexes.
ZimoLiao/scholaraio 332