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Topic: opencode

1,723 skills in this topic.

alphafold-database Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
foryourhealth111-pixel/Vibe-Skills 1,415
requesting-code-review Use when completing tasks, implementing major features, or before merging to verify work meets requirements
foryourhealth111-pixel/Vibe-Skills 1,415
drugbank-database Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.
foryourhealth111-pixel/Vibe-Skills 1,415
string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
foryourhealth111-pixel/Vibe-Skills 1,415
scientific-data-preprocessing ⚠️ CRITICAL USER EXPERIENCE-BASED SKILL - ALWAYS CONSULT BEFORE DATA PREPROCESSING ⚠️ Prevents catastrophic errors (88.9% error rate in V1.0 case study) through multi-level feature analysis, data leakage detection, and semantic validation. MANDATORY for: data preprocessing, feature engineering, standardization, normalization, interpolation, missing value handling, feature selection, or ANY data transformation task. Covers grouped time-series, cross-sectional, panel data. Detects: time travel leakage, causal inversion, ID misuse, semantic-numeric fallacies, distribution blindness. User's hard-won lessons from real project failures.
foryourhealth111-pixel/Vibe-Skills 1,415
security-ownership-map Analyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists or non-security ownership questions.
foryourhealth111-pixel/Vibe-Skills 1,415
spec-kit-vibe-compat Compatibility router for /speckit.* workflows into /vibe-first Codex execution.
foryourhealth111-pixel/Vibe-Skills 1,415
similarity-search-patterns Implement efficient similarity search with vector databases. Use when building semantic search, implementing nearest neighbor queries, or optimizing retrieval performance.
foryourhealth111-pixel/Vibe-Skills 1,415
scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
scientific-writing Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
foryourhealth111-pixel/Vibe-Skills 1,415
statistics-math Statistics, probability, linear algebra, and mathematical foundations for data science
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-tasks Break down implementation plans into actionable task lists. Use after planning to create a structured task breakdown. Generates tasks.md with ordered, dependency-aware tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
scikit-survival Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-checklist Generate custom quality checklists for validating requirements completeness and clarity. Use to create unit tests for English that ensure spec quality before implementation.
foryourhealth111-pixel/Vibe-Skills 1,415
generate-image Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that is not a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-taskstoissues Convert tasks from tasks.md into GitHub issues. Use after task breakdown to track work items in GitHub project management.
foryourhealth111-pixel/Vibe-Skills 1,415
torch_geometric Compatibility alias for the underscore PyG skill name. Delegate to the canonical local `torch-geometric` payload while preserving route compatibility.
foryourhealth111-pixel/Vibe-Skills 1,415
tdd-guide Test-driven development wrapper for vibe coding flow. Enforces RED -> GREEN -> REFACTOR and >=80% coverage target.
foryourhealth111-pixel/Vibe-Skills 1,415
sympy Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic expressions, working with matrices symbolically, physics calculations, number theory problems, geometry computations, and generating executable code from mathematical expressions. Apply this skill when the user needs exact symbolic results rather than numerical approximations, or when working with mathematical formulas that contain variables and parameters.
foryourhealth111-pixel/Vibe-Skills 1,415
statsmodels Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-specify Create or update feature specifications from natural language descriptions. Use when starting new features or refining requirements. Generates spec.md with user stories, functional requirements, and acceptance criteria following spec-driven development methodology.
foryourhealth111-pixel/Vibe-Skills 1,415
webthinker-deep-research Deep web research for VCO: multi-hop search+browse+extract with an auditable action trace and a structured report (WebThinker-style).
foryourhealth111-pixel/Vibe-Skills 1,415
visualization-best-practices Visualization Best Practices - Auto-activating skill for Data Analytics. Triggers on: visualization best practices, visualization best practices Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
foryourhealth111-pixel/Vibe-Skills 1,415