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Topic: opencode

1,723 skills in this topic.

flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
foryourhealth111-pixel/Vibe-Skills 1,415
latex-posters Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
foryourhealth111-pixel/Vibe-Skills 1,415
pymc-bayesian-modeling Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
foryourhealth111-pixel/Vibe-Skills 1,415
propositional-logic Problem-solving strategies for propositional logic in mathematical logic
foryourhealth111-pixel/Vibe-Skills 1,415
latchbio-integration Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
foryourhealth111-pixel/Vibe-Skills 1,415
medchem Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
foryourhealth111-pixel/Vibe-Skills 1,415
scientific-reporting Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix.
foryourhealth111-pixel/Vibe-Skills 1,415
Verification & Quality Assurance Comprehensive truth scoring, code quality verification, and automatic rollback system with 0.95 accuracy threshold for ensuring high-quality agent outputs and codebase reliability.
foryourhealth111-pixel/Vibe-Skills 1,415
receiving-code-review Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementation
foryourhealth111-pixel/Vibe-Skills 1,415
property-based-testing Property-based testing with fast-check (TypeScript/JavaScript) and Hypothesis (Python). Generate test cases automatically, find edge cases, and test mathematical properties. Use when user mentions property-based testing, fast-check, Hypothesis, generating test data, QuickCheck-style testing, or finding edge cases automatically.
foryourhealth111-pixel/Vibe-Skills 1,415
modal Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.
foryourhealth111-pixel/Vibe-Skills 1,415
geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, hyperspectral), vector and raster data operations, spatial statistics, point cloud processing, network analysis, and 7 programming languages (Python, R, Julia, JavaScript, C++, Java, Go) with 500+ code examples. Use for remote sensing workflows, GIS analysis, spatial ML, Earth observation data processing, terrain analysis, hydrological modeling, marine spatial analysis, atmospheric science, and any geospatial computation task.
foryourhealth111-pixel/Vibe-Skills 1,415
math-model-selector Routes problems to appropriate mathematical frameworks using expert heuristics
foryourhealth111-pixel/Vibe-Skills 1,415
geopandas Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
foryourhealth111-pixel/Vibe-Skills 1,415
vercel-deploy Deploy applications and websites to Vercel. Use when the user requests deployment actions like "deploy my app", "deploy and give me the link", "push this live", or "create a preview deployment".
foryourhealth111-pixel/Vibe-Skills 1,415
qiskit IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum computing. For Google hardware use cirq; for gradient-based quantum ML use pennylane; for open quantum system simulations use qutip.
foryourhealth111-pixel/Vibe-Skills 1,415
prompt-lookup Activates when the user asks about AI prompts, needs prompt templates, wants to search for prompts, or mentions prompts.chat. Use for discovering, retrieving, and improving prompts.
foryourhealth111-pixel/Vibe-Skills 1,415
torchdrug Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosynthesis, GNNs (GIN, GAT, SchNet), 40+ datasets, for PyTorch-based ML on molecules, proteins, and biomedical graphs.
foryourhealth111-pixel/Vibe-Skills 1,415
scikit-learn Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
foryourhealth111-pixel/Vibe-Skills 1,415
vibe-do-it Execute through the full governed path with an implementation-forward bias while keeping canonical vibe as the only governed runtime.
foryourhealth111-pixel/Vibe-Skills 1,415
pptx-posters Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
foryourhealth111-pixel/Vibe-Skills 1,415
scholarly-publishing End-to-end scholarly publishing workflow: manuscript → figures → LaTeX/Word → submission → revision/rebuttal → camera-ready. Includes meta-rules, checklists, repo structure, and case-based guidance.
foryourhealth111-pixel/Vibe-Skills 1,415
gtars High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
foryourhealth111-pixel/Vibe-Skills 1,415
labarchive-integration Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
foryourhealth111-pixel/Vibe-Skills 1,415