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Topic: openclaw

3,425 skills in this topic.

bio-proteomics-peptide-identification Peptide-spectrum matching and protein identification from MS/MS data. Use when identifying peptides from tandem mass spectra. Covers database searching, spectral library matching, and FDR estimation using target-decoy approaches.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-reporting-figure-export
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
string-protein-interaction-analysis-with-omicverse Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-fastq-to-variants
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-long-read-sequencing-clair3-variants Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. Use when calling germline variants from ONT or PacBio alignments, particularly when high accuracy is needed for clinical or research applications.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-rnaseq-qc RNA-seq specific quality control including rRNA contamination detection, strandedness verification, gene body coverage, and transcript integrity metrics. Use when validating RNA-seq libraries before differential expression analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-comparative-genomics-hgt-detection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cosmic-database Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-epitranscriptomics-merip-preprocessing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-systems-biology-model-curation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-flow-cytometry-bead-normalization Bead-based normalization for CyTOF and high-parameter flow cytometry. Covers EQ bead normalization, signal drift correction, and batch normalization. Use when correcting instrument drift in CyTOF or harmonizing data across batches.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-experimental-design-batch-design
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
clinical-trial-protocol-skill Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for investigational products.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-methylation-calling Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. Use when extracting methylation levels from aligned bisulfite sequencing data for downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-splicing-quantification Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. Calculates inclusion levels for skipped exons, alternative splice sites, mutually exclusive exons, and retained introns. Use when measuring splice site usage or isoform ratios from RNA-seq data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-machine-learning-atlas-mapping
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-population-genetics-association-testing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-spatial-transcriptomics-spatial-statistics Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when computing spatial autocorrelation or co-occurrence statistics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cellular-senescence-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-read-qc-umi-processing Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-structural-biology-alphafold-predictions Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-epidemiological-genomics-amr-surveillance Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. Monitor resistance trends and identify emerging resistance patterns. Use when screening genomes for AMR genes or tracking resistance in surveillance programs.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-read-qc-quality-reports Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. Assess per-base quality, adapter content, GC bias, duplication levels, and overrepresented sequences. Use when performing initial QC on raw sequencing data or validating preprocessing results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cnv-caller-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009