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Topic: cursor

7,943 skills in this topic.

scvi-tools This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
metabolomics-workbench-database Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
foryourhealth111-pixel/Vibe-Skills 1,415
timesfm-forecasting Zero-shot time series forecasting with Google's TimesFM foundation model. Use this skill when forecasting ANY univariate time series — sales, sensor readings, stock prices, energy demand, patient vitals, weather, or scientific measurements — without training a custom model. Automatically checks system RAM/GPU before loading the model, supports CSV/DataFrame/array inputs, and returns point forecasts with calibrated prediction intervals. Includes a preflight system checker script that MUST be run before first use to verify the machine can load the model. For classical statistical time series models (ARIMA, SARIMAX, VAR) use statsmodels; for time series classification/clustering use aeon.
foryourhealth111-pixel/Vibe-Skills 1,415
venue-templates Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
foryourhealth111-pixel/Vibe-Skills 1,415
openai-knowledge Compatibility alias for OpenAI platform documentation guidance. Delegate to the canonical local `openai-docs` payload while preserving route compatibility.
foryourhealth111-pixel/Vibe-Skills 1,415
matchms Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms.
foryourhealth111-pixel/Vibe-Skills 1,415
torch_geometric Compatibility alias for the underscore PyG skill name. Delegate to the canonical local `torch-geometric` payload while preserving route compatibility.
foryourhealth111-pixel/Vibe-Skills 1,415
brainstorming You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
foryourhealth111-pixel/Vibe-Skills 1,415
alphafold-database Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
foryourhealth111-pixel/Vibe-Skills 1,415
geniml This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
foryourhealth111-pixel/Vibe-Skills 1,415
file-organizer Intelligently organizes your files and folders across your computer by understanding context, finding duplicates, suggesting better structures, and automating cleanup tasks. Reduces cognitive load and keeps your digital workspace tidy without manual effort.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-taskstoissues Convert tasks from tasks.md into GitHub issues. Use after task breakdown to track work items in GitHub project management.
foryourhealth111-pixel/Vibe-Skills 1,415
flashrag-evidence Local evidence retrieval (FlashRAG-style) for VCO/vibe: search protocols/config/skills docs and return citeable snippets with file+line anchors.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-tasks Break down implementation plans into actionable task lists. Use after planning to create a structured task breakdown. Generates tasks.md with ordered, dependency-aware tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
fluidsim Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
latex-submission-pipeline LaTeX submission pipeline: templates, local build (latexmk), bibliography (bibtex/biber), lint (chktex), formatting (latexindent), CI build (GitHub Actions), and submission zip packaging.
foryourhealth111-pixel/Vibe-Skills 1,415
documentation-lookup This skill should be used when the user asks about libraries, frameworks, API references, or needs code examples. Activates for setup questions, code generation involving libraries, or mentions of specific frameworks like React, Vue, Next.js, Prisma, Supabase, etc.
foryourhealth111-pixel/Vibe-Skills 1,415
fred-economic-data Query FRED (Federal Reserve Economic Data) API for 800,000+ economic time series from 100+ sources. Access GDP, unemployment, inflation, interest rates, exchange rates, housing, and regional data. Use for macroeconomic analysis, financial research, policy studies, economic forecasting, and academic research requiring U.S. and international economic indicators.
foryourhealth111-pixel/Vibe-Skills 1,415
q-reason Think before building. Use when the user asks to reason about, analyze, evaluate, compare options, make an architecture decision, choose between approaches, think through a problem, or assess trade-offs. Also use when the user asks 'why did we...', 'should we...', 'what are our options', 'is this the right approach', or wants to frame/reframe a problem.
m0n0x41d/quint-code 1,266
context-optimizer Optimize token usage and context management. Use when sessions feel slow, context is degraded, or you're running out of budget.
rohitg00/pro-workflow 1,865
context-engineering Master the four operations of context engineering — Write, Select, Compress, Isolate. Manage token budgets, compaction strategies, and context partitioning to keep AI sessions sharp and efficient.
rohitg00/pro-workflow 1,865
compact-guard Smart context compaction with state preservation. Saves critical files, task progress, and working state before compaction, restores after. Use before manual compact or when auto-compact triggers.
rohitg00/pro-workflow 1,865
batch-orchestration Decompose large-scale changes into independent units and spawn parallel agents in isolated worktrees. Use for migrations, refactors, codemods, and any change touching 10+ files with the same pattern.
rohitg00/pro-workflow 1,865
auto-setup Auto-configure quality gates, hooks, and settings for a new project. Detects project type and sets up appropriate tooling. Use when onboarding a new codebase.
rohitg00/pro-workflow 1,865