Agent skill
obsidian-project-bootstrap
This skill should be used when the user asks to start a new research project, import an existing code-plus-Markdown repository into Obsidian, or bind the current repository to a compact research knowledge base for future syncing.
Install this agent skill to your Project
npx add-skill https://github.com/Galaxy-Dawn/claude-scholar/tree/main/skills/obsidian-project-bootstrap
SKILL.md
Obsidian Project Bootstrap
Bootstrap a project knowledge base for the current repository.
Role in the workflow
This is a supporting skill.
Use obsidian-project-memory as the main workflow authority. Use this skill only when a repository still needs its initial binding or rebuild.
When to use
- The user says “start a new research project”.
- The user has an existing repo with code plus Markdown and wants an Obsidian knowledge base generated automatically.
obsidian-project-memorydetects a research-project candidate but no existing binding.
Required input
Resolve the vault path from one of:
- explicit user input,
OBSIDIAN_VAULT_PATH.
Procedure
- Identify the repository root.
- Run a preflight detect step first:
bash
python3 "${CLAUDE_PLUGIN_ROOT}/skills/obsidian-project-memory/scripts/project_kb.py" detect --cwd "$PWD" - Only if the repo is unbound and should be imported, run bootstrap:
bash
python3 "${CLAUDE_PLUGIN_ROOT}/skills/obsidian-project-memory/scripts/project_kb.py" bootstrap --cwd "$PWD" --vault-path "$OBSIDIAN_VAULT_PATH" - Verify that bootstrap created at least:
.claude/project-memory/registry.yaml.claude/project-memory/<project_id>.mdResearch/{project-slug}/00-Hub.mdResearch/{project-slug}/01-Plan.mdResearch/{project-slug}/Knowledge/Source-Inventory.mdResearch/{project-slug}/Knowledge/Codebase-Overview.md
- If the imported project still lacks real background or experiment context, switch to an agent-first pass:
- read the most informative repo docs and code entry points,
- synthesize durable notes into
Knowledge/,Papers/,Experiments/,Results/, orWriting/, - avoid placeholder notes.
- Summarize the created knowledge base and the next recommended canonical notes to fill in.
Notes
- The bootstrap process imports structure and summaries, not raw datasets, caches, checkpoints, or the whole code tree.
- Ignore
.git,.venv,node_modules, caches, checkpoints, binaries, and other heavy artifacts. - The default vault is compact:
00-Hub.md,01-Plan.md,Knowledge/,Papers/,Experiments/,Results/,Writing/,Daily/,Archive/. - If
python3is unavailable in the current shell, use the system Python interpreter that can runproject_kb.pyand say so explicitly.
References
references/BOOTSTRAP-RUNBOOK.md- preflight decisions, failure modes, and post-bootstrap verification
Recommended Agent Skills
Expand your agent's capabilities with these related and highly-rated skills.
bug-detective
This skill should be used when the user asks to "debug this", "fix this error", "investigate this bug", "troubleshoot this issue", "find the problem", "something is broken", "this isn't working", "why is this failing", or reports errors/exceptions/bugs. Provides systematic debugging workflow and common error patterns.
doc-coauthoring
This skill should be used when the user asks to co-author documentation, draft a proposal, write a technical spec, create a decision doc or RFC, or structure a substantial document through iterative collaboration and reader testing.
daily-paper-generator
Use when the user asks to "generate daily paper", "search arXiv for EEG papers", "find EEG decoding papers", "review brain-computer interface papers", or wants to create paper summaries for EEG/brain decoding/speech decoding research. This skill automates searching arXiv for recent papers on EEG decoding, EEG speech decoding, or brain foundation models, reviewing paper quality, and generating structured Chinese/English summaries.
paper-self-review
This skill should be used when the user asks to "review paper quality", "check paper completeness", "validate paper structure", "self-review before submission", or mentions systematic paper quality checking. Provides comprehensive quality assurance checklist for academic papers.
agent-identifier
Use when creating or configuring Claude Code agents and their frontmatter.
obsidian-cli
Interact with Obsidian vaults using the Obsidian CLI to read, create, search, and manage notes, tasks, properties, and more. Also supports plugin and theme development with commands to reload plugins, run JavaScript, capture errors, take screenshots, and inspect the DOM. Use when the user asks to interact with their Obsidian vault, manage notes, search vault content, perform vault operations from the command line, or develop and debug Obsidian plugins and themes.
Didn't find tool you were looking for?