Agent skill
dqmc-run
Execute DQMC Monte Carlo sweeps on HDF5 simulation files. Use when running simulations, checkpointing long runs, using the queue system for multiple files, or checking simulation status.
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Install this agent skill to your Project
npx add-skill https://github.com/majiayu000/claude-skill-registry/tree/main/skills/development/dqmc-run
SKILL.md
Run Simulations
Inputs
- HDF5 simulation file(s) from the dqmc-generate and dqmc-parameter-scans skills
- Binary at
build/dqmc, worker utility fromdqmc-util worker
Outputs
- Updated HDF5 files with measurements in
/meas_eqlt/(and/meas_uneqlt/if enabled)
Decision Rules (single vs queue)
- Exactly 1 file: run it directly with
build/dqmc sim_0.h5. - 2+ files: use the queue/worker system (
dqmc-util enqueue+dqmc-util worker) even on a local workstation.- This avoids ad-hoc shell loops, makes restarts/checkpointing consistent, and scales to parallel execution safely.
Procedure
Single file:
bash
build/dqmc sim_0.h5
With checkpointing (long runs):
bash
build/dqmc -s 300 -t 3600 sim_0.h5 # checkpoint every 300 seconds, max runtime 3600 seconds
Multiple files (queue system):
bash
# 1. Add files to queue/ (globs are expanded by Python, so quote them)
dqmc-util enqueue queue 'data/run/bin_*.h5'
# 2. Start workers
dqmc-util worker queue ./build/dqmc -n 8 -s 300 -t 3600 # 8 parallel workers
Multiple files (local temperature scan example):
bash
# enqueue all bins across temperatures
dqmc-util enqueue queue 'runs/pi_pi_U8_6x6/T*/bin_*.h5'
# run N workers in parallel (pick N for your machine)
dqmc-util worker queue ./build/dqmc -n 8 -s 300 -t 3600
Validation (single file)
bash
dqmc-util summary sim_0.h5
For multiple files:
bash
dqmc-util print-n data/run/ # directory paths should end with '/'
Failure Modes
| Symptom | Cause | Recovery |
|---|---|---|
| "opening... failed" | File doesn't exist | Check path |
| NaN in output | Numerical instability | Reduce dt and/or n_matmul. Check parameters |
| Killed by scheduler | Exceeded time limit | Use -t flag, checkpoint enabled |
| Large errorbars | Sign problem | Add more sweeps and/or bins |
Do Not
- Kill running simulations without checkpointing (
-sflag) - Run multiple workers on the same file
- Use manual shell loops for 2+ files (prefer
dqmc-util enqueue+dqmc-util worker)
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